First Duplicate without user-selected canonical that passed webmaster tools when I added user <link rel="canonical from yoast plugin now Duplicate, Go

First Duplicate without user-selected canonical that passed webmaster tools when I added user <link rel="canonical from yoast plugin now Duplicate, Google chose different canonical than user started. My question if I fail what should I do? I know that my website in webmaster tools is added in http if it fails should I add the site in https then try submitting again?