Found this really good site analyser that focuses on onsite issues really well, especially useful post penguin I guess. Attached a partial screenshot of the report showing the areas it covers. Give it a go! Didn't find any of my links though, so don't think it compares in that department.
http://sitebeam.net/ - Sign up for the free trial.

http://sitebeam.net/ - Sign up for the free trial.

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