care to share which CTR theme it is???
http://googlewebmastercentral.blogspot.com/2012/01/page-layout-algorithm-improvement.html
https://flippa.com/2691986-ctr-theme-pr6-site-8-029-mo-net-2-7-million-links
Is it the CTR Theme from Eppie? You might want to disable the 336x280 side-by-side or Eppie call it the "road block". Google don't like it based on their latest Page Layout Algorithm Changed;
Code:http://googlewebmastercentral.blogspot.com/2012/01/page-layout-algorithm-improvement.html
Even Eppie himself see it as potential problem to this new algorithm update. Read his comments here on this Flippa auction
Code:https://flippa.com/2691986-ctr-theme-pr6-site-8-029-mo-net-2-7-million-links
Just installed a CTR theme for one of my MNS sites today. My CTR has gone from 2% to 6% and I only installed the theme half way through the dayhappy happy
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Ive Been using CTR theme on 10 sites, i just display two ads top and side its been ok for almost a year no ban. my ctr sits around 2-4%