Ebay Affiliate SEO

Hi there everybody, i builded a few websites for some ebay products after some keyword research. After a few weeks some of those sites ranked in #11 #40 #52 #53.

I notice that most of them where not indexed in the root (where im doing the backlink process), "Big G" indexed pages like "/index.php?mode=less" and to "/index.php".

I did some .htaccess stuff to redirect all /index.php to "/"(root) and works fine.

So here are a few questions:

1) When doing the 301 redirect, my indexed pages like "/index.php" will be replaced with the root? I mean.. if i search my keyword in google my website was indexed as "/index.php" ... after doing the 301 redirect google will show my root webpage?

2) Do you recommend me to "no-index" the categories pages and the "/index.php?mode=less"pages?

Thanks a lot!

If anyone whats the .htaccess file is :

Options +FollowSymLinks
DirectoryIndex index.php

RewriteEngine On
RewriteBase /
RewriteCond %{THE_REQUEST} ^[A-Z]{3,9}\ /index\.php\ HTTP/
RewriteRule ^index\.php$ http://www.yoursite.com/ [R=301,L]

RewriteCond %{REQUEST_FILENAME} !-f
RewriteCond %{REQUEST_FILENAME} !-d
RewriteRule . /index.php [L]

RewriteCond %{HTTP_HOST} ^yoursite.com [NC]
RewriteRule ^(.*)$ http://www.yoursite.com/$1 [L,R=301]

someboy please?

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