This is quite natural .. this will take time as Google need to reindex all the backlinks and pass all the value of the previous domain to the new ones and one to make myself clear that there is no certainty that you ranking will get back to its former position .. 301 is just a directive and...
Yeah it is nothing .. Google has already clarified this .. just another usual bug in Webmaster tools .. you will get details of all your links within few days .. not to worry
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